Cottage Cheese Breakfast Muffins with Mushrooms and Feta
Cottage Cheese Breakfast Muffins with Mushrooms and Feta are one of my long-time favorites to grab for a quick breakfast! These are vegetarian breakfast muffins; see tips in the recipe for making a version that’s Keto and gluten-free!
PIN these Vegetarian Breakfast Muffins to try them later!

Cottage Cheese Breakfast Muffins with Mushrooms and Feta are a cottage cheese muffin recipe that I’ve loved for years! I do have several variations for this type of muffin with cottage cheese and eggs on the blog. But the others both have meat, and these are vegetarian breakfast muffins!
I love all three versions of the cottage cheese breakfast muffins and they’re something I make regularly! The recipe I use is low in carbs but has the tiniest bit of flour, but see below for options to make this recipe Keto and gluten-free.
These muffins with cottage cheese, eggs, mushrooms, and Feta are a breakfast I always enjoy, so I’m reminding you about them for Friday Favorites this week. Hope you’ll try them if you’re a mushroom and Feta fan like I am!
What ingredients do you need for this recipe?
(This is only a list of ingredients; please scroll down for complete printable recipe. Or if you use the JUMP TO RECIPE link at the top of the page, it will take you directly to the complete recipe with ingredient amounts.)
- Cremini mushrooms
- Olive Oil (affiliate link)
- cottage cheese
- Parmesan cheese
- White Whole Wheat Flour (affiliate link), or see below for gluten-free options
- Almond Flour (affiliate link)
- baking powder
- Spike Seasoning (affiliate link), or other all-purpose seasoning that’s good with eggs
- eggs
- water
- crumbled Feta
- green onions
What if you don’t want to use flour?
You can switch out the small amount of white whole wheat flour in these vegetarian breakfast muffins for Hemp Hearts (affiliate link) or Flaxseed Meal (affiliate link) if you don’t want to use flour. That will be a version that’s Keto and gluten-free.
What cottage cheese do I use for Cottage Cheese Breakfast Muffins?
You can use full-fat or reduced-fat cottage cheese for this recipe, but personally I have a strong preference for full-fat cottage cheese, and that’s the one I always use. And for everyone who shops at Kroger, I love their large-curd whole milk cottage cheese!
How low in carbs are the vegetarian breakfast muffins?
- With the small amount of white whole wheat flour, these breakfast muffins have 8.4 net carbs and 13 grams of protein in each large muffin.
- If you switch the flour for hemp hearts, those muffins will have 4.9 net carbs and 14 grams of protein.
- If you switch the flour for flaxseed meal, those muffins will have 4.7 net carbs and 13 grams of protein.
More Muffins to make for Breakfast:
I love making muffins on the weekend and grabbing them for a quick breakfast during the week, and Low-Carb Muffins and Breakfast Muffins are something never get tired of for a grab-and-go breakfast.
How to Make Cottage Cheese Breakfast Muffins with Mushrooms and Feta:
(This is only a summary of the steps for the recipe; please scroll down for complete printable recipe. Or if you use the JUMP TO RECIPE link at the top of the page, it will take you directly to the complete recipe.)
- Preheat oven or toaster oven.
- Wash and dry mushrooms and dice into pieces about 1/4 inch.
- Heat olive oil in frying pan, add mushrooms and cook until mushrooms are starting to brown and liquid has evaporated.
- Mix batter ingredients, then gently fold in the cooked mushrooms, feta cheese, and sliced green onions.
- Spray individual Silicone Baking Cups (affiliate link) with non-stick spray if desired, and place on cookie sheet.
- Divide batter equally into six large silicone muffin cups.
- Bake until muffins are slightly browned and firm, about 30 minutes.
- Serve Cottage Cheese Breakfast Muffins hot.
- These can be kept in the fridge and reheated in the microwave, which is what I do every time I make them.
Weekend Food Prep:
This recipe has been added to a category called Weekend Food Prep where you’ll find recipes you can prep or cook on the weekend and eat during the week!
 
	
	
	
Cottage Cheese Breakfast Muffins with Mushrooms and Feta
Cottage Cheese Breakfast Muffins with Mushrooms and Feta Cheese are one of my favorite things to make ahead and then grab for a quick breakfast! And my site has several variations of this muffin recipe, but these are Vegetarian Breakfast Muffins.
Ingredients
- 8 oz. Cremini mushrooms, diced into 1/4 inch pieces
- 2 tsp. olive oil
- 1/3 cup cottage cheese
- 1/4 cup Parmesan cheese
- 1/4 cupย white whole wheatย flour (see notes)
- 2/3 cup almond flour (see notes)
- 1 tsp. baking powder
- 1 tsp. Spike Seasoning (see notes)
- 4 eggs, beaten
- 3 T water
- 1/2 cup crumbled feta
- 2 T sliced green onions
Instructions
- Preheat oven or toaster oven to 400F/205C.
- Wash mushrooms and spin dry or dry with paper towel. Dice mushrooms into pieces about 1/4 inch.
- Heat olive oil in heavy frying pan, add mushrooms and cook about 5 minutes, until mushrooms are starting to brown and all liquid has evaporated.
- While mushrooms are cooking, combine cottage cheese, parmesan cheese,ย white whole wheatย flour (or Flaxseed Meal or Hemp Hearts if that's what you're using), almond meal, baking powder, Spike Seasoning, eggs, and water in large plastic bowl.
- Stir together with large spoon.
- When mushrooms are done and slightly cooled, gently stir mushrooms, Feta cheese, and green onions into batter.
- Spray individual silicone muffin cups or silicone muffin pans with non-stick spray if desired. If using individual muffin cups, place on cookie sheet.
- Fill muffin cups nearly full, dividing batter so cups are equally filled.
- Bake 25-30 minutes, or until muffins are slightly browned and firm. (I bake them slightly longer than 30 minutes because I like them nicely browned.
- Serve the Cottage Cheese Breakfast Muffins hot or at room temperature.
- Can be stored in the refrigerator and reheated in microwave. Donโt microwave more than 1-2 minutes.
Notes
You can switch the white whole wheat flour for Flaxseed Meal (affiliate link) or Hemp Hearts (affiliate link) if you don't want to use flour. That will give a variation of the recipe that's slightly lower in carbs and gluten-free.
Coarser almond meal will also work fine for this recipe.
Spike Seasoning (affiliate link)ย is optional but highly recommended, or use another all purpose seasoning blend thatโs good with eggs.
I highly recommendย Silicone Baking Cups for this recipe, either large or small. If you donโt have silicone muffin cups or tins, be sure your pan is sprayed well with non-stick spray or olive oil or youโll have a very hard time getting these out of the pan.
Recipe adapted fromย Cottage Cheese Muffinsย at 101 Cookbooks, original recipe byย Rose Elliot.
Nutrition Information
Yield
6Serving Size
1Amount Per Serving Calories 222Total Fat 15gSaturated Fat 4.5gTrans Fat 0gUnsaturated Fat 9.8gCholesterol 141mgSodium 618mgCarbohydrates 10gFiber 2.4gSugar 2.4gProtein 13g
Nutrition information is automatically calculated by the Recipe Plug-In I am using. I am not a nutritionist and cannot guarantee 100% accuracy, since many variables affect those calculations.
 
Low-Carb Diet / Low-Glycemic Diet / South Beach Diet Suggestions:
These vegetarian cottage cheese muffins make a good breakfast for low-carb or low-glycemic eating plans. I really like the texture of the muffins with the tiny bit of flour, but if you need a variation that’s Keto or Gluten-Free, just replace the flour with Flaxseed Meal or Hemp Hearts. The amount of flour is minimal, but the muffins would be phase 2 or 3 for the original South Beach Diet. The muffins do contain a significant amount of fat from almond meal, Parmesan cheese, and Feta cheese, so this would be a personal choice if you’re following the original South Beach diet. 
Find More Recipes Like This One:
Use Breakfast Recipes to find more recipes like this one. Use the Diet Type Index to find recipes suitable for a specific eating plan. You might also like to follow Kalynโs Kitchen on Pinterest, on Facebook, on Instagram, on TikTok, or on YouTube to see all the good recipes Iโm sharing there.
Historical Notes for this Recipe:
This recipe for a vegetarian version of my favorite cottage cheese breakfast muffins was first posted in 2008. It was updated with more information and the option for a variation that’s Keto and Gluten-Free in 2021, and last updated with more information in 2025.

 
			 
	    	





![Cottage Cheese and Egg Breakfast Muffins with Mushrooms and Feta Cheese [found on KalynsKitchen.com] Cottage Cheese and Egg Breakfast Muffins with Mushrooms and Feta Cheese](https://kalynskitchen.com/wp-content/uploads/2015/10/2-550-cottage-cheese-egg-muffin-mushrooms-5-kalynskitchen.jpg)
 
	    	
39 Comments on “Cottage Cheese Breakfast Muffins with Mushrooms and Feta”
What can we use in place of almond flour for those with nut allergies?
I’m afraid I haven’t ever made this without almond flour and I’m not a good enough baker to just guess at what would work. But if you try something that does work, I’d love to know about it.
Wow- these are SO good! They will definitely be made again next week! They also heated up nicely.
So glad you enjoyed, I LOVE this recipe (and the other variations too.)
Made these muffins this morning and they are great. I’ve never thought about a savory muffin but these really hit the spot for breakfast. Thanks for a great recipe.
So glad you liked them. This is one of my all-time faves for breakfast!
Kalyn,
Is there a substitute for the almond meal? I am very allergic to all things nut. So I was trying to figure out what to substitute for this ingredient. I already have gluten free flour. I just didn’t know what to do about the almond meal.
Thank you for your time.
I haven’t tried them without almond flour and I’m afraid I am not a good enough baker to know just how it would work with other flours. You could try replacing both kinds of flour with gluten-free flour (and you’d probably need to adjust the amount of baking powder). But I don’t know for sure how it would work, that would just be an experiment. Let me know how it goes if you try it!
These look delicious, Kalyn. Trying them tomorrow….and my grandkids will test them too. Wanda
Thanks Wanda, hope you enjoy! The recipe is kind of an interesting combination of ingredients, but it works!
Anna, I have added suggestions for a version that’s Keto and Gluten-Free.
These look awesome. Any suggestions for flour substitute for the gluten free crowd?
Alaswhatever, so glad, and thanks for letting me know!
Delicious! I used regular whole wheat because I didn’t have white, and they came out beautifully.
Alaswhatever, I haven’t tried it with regular whole wheat, but I think it would work fine. I might add a tiny pinch more baking powder (not much though.) Love to hear how they turn out with whole wheat if you try it.
What a wonderful recipe. I have regular whole wheat flour, but not white whole wheat. Would regular whole wheat work okay?
Jamie, sounds delicious!
I made these after cruising through 101 cookbooks the other day and decided a new flavor was in order, more breakfasty: dried cranberries, mint, and lemon-herb goat cheese. Delicious!
Kalyn these look like a great run-out the door breakfast for my busy family! Can’t wait to give these a try!
I’d never quite thought of a more savory muffin, instead always seeing muffins more like a breakfast dessert. Those sound like a delicious way to start the day. Very creative!
Terry, I’ve given the option to use flaxseed meal mixed with almond meal for a Keto and Gluten-Free version, but I don’t think I would use more than maybe 1/3 flaxseed meal to replace the almond meal. Let me know how it turns out if you try it.
Kalyn–These sound great! Savory muffins are far more interesting to me than sweet ones. The almond meal was an interesting call. As another take, what about perhaps substituting flaxseed meal for its Omega-3 fatty acids?
hmmm, what an interesting combination. crimini mushrooms and feta cheese….i must try this sometime. it sounds kind of delicious (although i can’t eat cheese…maybe i’ll try to sneak this pass my system).
Another tasty sounding egg muffin!
They looks delicious! I’ve been looking for a variation to the Phase One muffins. I’ll try it this week!
I love this idea! I am not a huge fan of cottage cheese and like the recipes that “mask” what it is. I will have to try this one!
Oh these are my kind of muffins. I love the combination of flavors here. You are having a thing for feta right now, huh? But as I love feta I am loving each recipe!
muffins looks so cute and delicious
What a grand variation Kalyn.
Yes I get very excited when those small things come into alignment just so and make life perfect for just a moment.
Beautiful photo of the mushrooms!
YUM!! Never heard of Spike seasoning but sounds like something I need to add to my pantry list. These muffins are right up my alley! ๐
I love the idea of any savoury muffin so these sound and look wonderful.
I also find using individual muffin cups easy, except mine are metal.
i love muffins…especialy savoury ones, but havent tried making muffins before…will try soon, wish me luck ๐
Life IS good. Very pretty. I’m getting a springtime urge to buy cute little dishes too.
Love a savoury muffin in the morning!
Kalyn, how cruel of you to post those pictures–and then the recipe! They look so yummy, and just the kind of thing to eat in the morning..and for lunch..and all during the day, because they are irresistible!
Those muffin cups are really cute. And the muffins inside them look yummy.
This side of the pond I only ever heard of sweet muffins. These savoury ones sound fantastic.
I’m a big fan of white whole wheat flour, which seems to be less heavy than traditional whole wheat. Thanks for the idea of adding almond meal into these muffins; I wouldn’t have thought of it.
Kalyn, these sound wonderful…they would be very welcome on a Greek table.